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<article article-type="research-article" dtd-version="1.3" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="ru"><front><journal-meta><journal-id journal-id-type="publisher-id">jofin</journal-id><journal-title-group><journal-title xml:lang="ru">Журнал инфектологии</journal-title><trans-title-group xml:lang="en"><trans-title>Journal Infectology</trans-title></trans-title-group></journal-title-group><issn pub-type="ppub">2072-6732</issn><publisher><publisher-name>IPO “АIDSSPbR"</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="doi">10.22625/2072-6732-2019-11-2-45-52</article-id><article-id custom-type="elpub" pub-id-type="custom">jofin-883</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research Article</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="ru"><subject>Оригинальное исследование</subject></subj-group><subj-group subj-group-type="section-heading" xml:lang="en"><subject>Original Research</subject></subj-group></article-categories><title-group><article-title>Выявление Bordetella holmesii среди больных, госпитализированных в стационар с подозрением на коклюш или коклюшеподобные заболевания</article-title><trans-title-group xml:lang="en"><trans-title>Identification of Bordetella holmesii among the patients hospitalized with suspicion of pertussis and pertussis-like illnesses</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Гадуа</surname><given-names>Н. Т.</given-names></name><name name-style="western" xml:lang="en"><surname>Gadua</surname><given-names>N. T.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Гадуа Натия Торникеевна – старший научный сотрудник лаборатории диагностики дифтерийной и коклюшной инфекций, кандидат медицинских наук </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">8nati8@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Борисова</surname><given-names>А. Б.</given-names></name><name name-style="western" xml:lang="en"><surname>Borisova</surname><given-names>A. B.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Борисова Анастасия Борисовна – младший научный сотрудник клинического отдела Московского научноисследовательского института эпидемиологии и микробиологии им. Г.Н. Габричевского; врач-ординатор кафедры инфекционных болезней у детей Российского национального исследовательского медицинского университета им. Н.И. Пирогова</p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">nastasiaboris93@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Пименова</surname><given-names>А. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Pimenova</surname><given-names>A. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Пименова Алена Сергеевна – научный сотрудник лаборатории диагностики дифтерийной и коклюшной инфекций, кандидат медицинских наук </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">alenaa_85@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Борисова</surname><given-names>О. Ю.</given-names></name><name name-style="western" xml:lang="en"><surname>Borisova</surname><given-names>O. Yu.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Борисова Ольга Юрьевна – руководитель лаборатории диагностики дифтерийной и коклюшной инфекций Московского научно-исследовательского института эпидемиологии и микробиологии им. Г.Н. Габричевского; профессор кафедры микробиологии и вирусологии Российского национального исследовательского медицинского университета им. Н.И. Пирогова, доктор медицинских наук, доцент</p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">olgborisova@mail.ru</email><xref ref-type="aff" rid="aff-2"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Петрова</surname><given-names>М. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Petrova</surname><given-names>M. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Петрова Марина Семеновна – старший научный сотрудник клинического отдела, кандидат медицинских наук</p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">gabrich@mail.ru</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Шамшева</surname><given-names>О. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Shamsheva</surname><given-names>O. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Шамшева Ольга Васильевна – заведующая кафедрой инфекционных болезней у детей, доктор медицинских наук, профессор</p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">ch-infection@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Афанасьев</surname><given-names>С. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Afanas’ev</surname><given-names>S. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Афанасьев Станислав Степанович – главный научный сотрудник, доктор медицинских наук, профессор </p><p>Москва</p></bio><bio xml:lang="en"/><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Кафарская</surname><given-names>Л. И.</given-names></name><name name-style="western" xml:lang="en"><surname>Kafarskaya</surname><given-names>L. I.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Кафарская Людмила Ивановна – заведующая кафедрой микробиологии и вирусологии, доктор медицинских наук, профессор </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">likmed@mail.ru</email><xref ref-type="aff" rid="aff-3"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Власов</surname><given-names>Е. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Vlasov</surname><given-names>E. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Власов Евгений Валерьевич – заместитель главного врача по медицинской части (детство) </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">ikb1@zdrav.mos.ru</email><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Афанасьев</surname><given-names>М. С.</given-names></name><name name-style="western" xml:lang="en"><surname>Afanas’ev</surname><given-names>M. S.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Афанасьев Максим Станиславович – профессор кафедры клинической аллергологии и иммунологии, доктор медицинских наук </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">mafa78@inbox.ru</email><xref ref-type="aff" rid="aff-5"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Алешкин</surname><given-names>А. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Aleshkin</surname><given-names>A. V.</given-names></name></name-alternatives><bio xml:lang="ru"/><bio xml:lang="en"/><email xlink:type="simple">info@gabrich.com</email><xref ref-type="aff" rid="aff-1"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Бунин</surname><given-names>С. В.</given-names></name><name name-style="western" xml:lang="en"><surname>Bunin</surname><given-names>S. V.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Бунин Сергей Валерьевич – заведующий 3-м педиатрическим инфекционным отделением </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">ikb1@zdrav.mos.ru</email><xref ref-type="aff" rid="aff-4"/></contrib><contrib contrib-type="author" corresp="yes"><name-alternatives><name name-style="eastern" xml:lang="ru"><surname>Алешкин</surname><given-names>В. А.</given-names></name><name name-style="western" xml:lang="en"><surname>Aleshkin</surname><given-names>V. A.</given-names></name></name-alternatives><bio xml:lang="ru"><p>Алешкин Владимир Андрианович – научный руководитель, доктор биологических наук, профессор </p><p>Москва</p></bio><bio xml:lang="en"/><email xlink:type="simple">info@gabrich.com</email><xref ref-type="aff" rid="aff-1"/></contrib></contrib-group><aff-alternatives id="aff-1"><aff xml:lang="ru"><institution>Московский научно-исследовательский институт эпидемиологии и микробиологии им. Г.Н. Габричевского</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Moscow Research Institute for Epidemiology and Microbiology named after G.N. Gabrichevsky</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-2"><aff xml:lang="ru"><institution>Московский научно-исследовательский институт эпидемиологии и микробиологии им. Г.Н. Габричевского; &#13;
Российский национальный исследовательский медицинский университет им. Н.И. Пирогова</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Moscow Research Institute for Epidemiology and Microbiology named after G.N. Gabrichevsky; &#13;
Russian National Research Medical University named after N.I. Pirogov</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-3"><aff xml:lang="ru"><institution>Российский национальный исследовательский медицинский университет им. Н.И. Пирогова</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Russian National Research Medical University named after N.I. Pirogov</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-4"><aff xml:lang="ru"><institution>Инфекционная клиническая больница № 1</institution><country>Россия</country></aff><aff xml:lang="en"><institution>Infectious diseases clinical hospital № 1</institution><country>Russian Federation</country></aff></aff-alternatives><aff-alternatives id="aff-5"><aff xml:lang="ru"><institution>Первый Московский государственный медицинский университет им. И.М. Сеченова</institution><country>Россия</country></aff><aff xml:lang="en"><institution>First Moscow State Medical University named after I.M. Sechenov</institution><country>Russian Federation</country></aff></aff-alternatives><pub-date pub-type="collection"><year>2019</year></pub-date><pub-date pub-type="epub"><day>16</day><month>05</month><year>2019</year></pub-date><volume>11</volume><issue>2</issue><fpage>45</fpage><lpage>52</lpage><permissions><copyright-statement>Copyright &amp;#x00A9; Гадуа Н.Т., Борисова А.Б., Пименова А.С., Борисова О.Ю., Петрова М.С., Шамшева О.В., Афанасьев С.С., Кафарская Л.И., Власов Е.В., Афанасьев М.С., Алешкин А.В., Бунин С.В., Алешкин В.А., 2019</copyright-statement><copyright-year>2019</copyright-year><copyright-holder xml:lang="ru">Гадуа Н.Т., Борисова А.Б., Пименова А.С., Борисова О.Ю., Петрова М.С., Шамшева О.В., Афанасьев С.С., Кафарская Л.И., Власов Е.В., Афанасьев М.С., Алешкин А.В., Бунин С.В., Алешкин В.А.</copyright-holder><copyright-holder xml:lang="en">Gadua N.T., Borisova A.B., Pimenova A.S., Borisova O.Y., Petrova M.S., Shamsheva O.V., Afanas’ev S.S., Kafarskaya L.I., Vlasov E.V., Afanas’ev M.S., Aleshkin A.V., Bunin S.V., Aleshkin V.A.</copyright-holder><license xml:lang="ru" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>Данная работа распространяется под лицензией Creative Commons Attribution 4.0.</license-p></license><license xml:lang="en" license-type="creative-commons-attribution" xlink:href="https://creativecommons.org/licenses/by/4.0/" xlink:type="simple"><license-p>This work is licensed under a Creative Commons Attribution 4.0 License.</license-p></license></permissions><self-uri xlink:href="https://journal.niidi.ru/jofin/article/view/883">https://journal.niidi.ru/jofin/article/view/883</self-uri><abstract><sec><title>Цель</title><p>Цель: выявить и оценить распространенность B. holmesii среди больных, госпитализированных в стационар с подозрением на коклюш и коклюшеподобные заболевания.</p></sec><sec><title>Материалы и методы</title><p>Материалы и методы. Исследовано 424 пробы клинического материала от больных с подозрением на коклюш и коклюшеподобные заболевания, госпитализированных в Инфекционную клиническую больницу № 1 в 2017– 2018 гг. Выявление фрагментов генома бордетелл осуществляли в ПЦР-РВ с «АмплиСенс® Bordetella multi-FL». Для идентификации фрагментов генома B. holmesii использовали ПЦР-РВ с праймерами IS481, IS1001 и hIS1001. </p></sec><sec><title>Результаты</title><p>Результаты. В исследование включено 424 пациента, из них 57,6% детей до 1 года, 42,3% детей старше 1 года и 2,6% взрослых. При использовании тестсистемы обнаружено 60,4% образцов, содержащих ДНК B. pertussis; 1,9% образцов – ДНК B. parapertussis; в 34,9% образцов получен отрицательный и в 2,8% – сомнительный результаты. Исследование 424 образцов в ПЦР-РВ с помощью IS481, IS1001 и hIS1001 праймеров показало, что 61,1% образцов содержали ДНК B. pertussis; 0,7% образцов – ДНК В. parapertussis и 3,8% образцов – ДНК B. holmesii. В 143 образцах результат был отрицательным. Из 16 ДНК B. holmesii, 9 образцов ранее были отрицательными, в 2 образцах – сомнительный результат и 1 образец был ранее идентифицирован как ДНК B. parapertussis, в 4 образцах обнаружена ДНК B. pertussis и B. holmesii.</p></sec><sec><title>Заключение</title><p>Заключение. Исследование свидетельствует о циркуляции B. holmesii на территории России, что под тверждается выявлением положительных образцов в 3,8% случаев среди больных детей и взрослых, госпитализированных в стационар с подозрением на коклюш и коклюшеподобные заболевания. Для повышения эффективности лабораторного подтверждения клинического диагноза коклюша и коклюшеподобных заболеваний рекомендуется совершенствовать генодиагностику коклюшной инфекции с учетом идентификации ДНК B. holmesii.</p></sec></abstract><trans-abstract xml:lang="en"><sec><title>Purpose</title><p>Purpose. To reveal and estimate prevalence of B. holmesii among the patients hospitalized with suspicion pertussis and pertussis-like illnesses.</p></sec><sec><title>Materials and methods</title><p>Materials and methods. 424 clinical samples received from patients with of pertussis and pertussis-like illnesses in GBUZ IKB № 1 DZM in 2017–2018 are investigated. Identification of fragments of a genome of Bordetella was carried out in PCR-RT with “Amplisens® Bordetella multi-FL”. For identification of fragments of a genome of B. holmesii used PCR-RT with primers of IS481, IS1001 and hIS1001.</p></sec><sec><title>Results</title><p>Results. The research included 424 patients, from them 56,1% of children aged till 1 year, 41,3% of children – are more senior than 1 year and 2,6% of adults. When using test system 60,4% of the samples containing DNA of B. pertussis are revealed; 1,9% of samples – DNA of B. parapertussis; in 34,9% of samples it is received negative and in 2,8% – doubtful results. The research of 424 samples in PCR-RT by means of IS481, IS1001 and hIS1001 primers showed that 61,1% of samples contained DNA of B. pertussis; 0,7% of samples – DNA of B. parapertussis and 3,8% of samples – DNA of B. holmesii. In 143 samples the result was negative. From 16 DNA of B. holmesii – positive samples, 9 samples were negative in test system earlier, in 2 samples – the doubtful result, 1 sample was earlier identified as DNA of B. parapertussis and in 4 samples DNA of B. pertussis and B. holmesii are found.</p></sec><sec><title>Conclusion</title><p>Conclusion. The research demonstrates circulation of B. holmesii in the territory of Russia that is confirmed by identification of positive samples in 3,8% of cases among the sick children and adults hospitalized in a hospital with suspicion of pertussis and pertussis-like illnesses. For increase in efficiency of laboratory confirmation of the clinical diagnosis of pertussis and pertussis-like illnesses the genodiagnostic of a pertussis is recommended to improve taking into account identification DNA of B. holmesii.</p></sec></trans-abstract><kwd-group xml:lang="ru"><kwd>коклюш</kwd><kwd>B. pertussis</kwd><kwd>B. holmesii</kwd><kwd>ПЦР-РТ</kwd><kwd>пациенты</kwd><kwd>возраст</kwd></kwd-group><kwd-group xml:lang="en"><kwd>whooping cough</kwd><kwd>B. pertussis</kwd><kwd>B. holmesii</kwd><kwd>PCR-RT</kwd><kwd>patients</kwd><kwd>age</kwd></kwd-group></article-meta></front><back><ref-list><title>References</title><ref id="cit1"><label>1</label><citation-alternatives><mixed-citation xml:lang="ru">Cherry JD, Pertussis and other Bordetella infections. In: Cherry JD, Demmler-Harrison G, Kaplan S., editors. 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